PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009593967.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HD-ZIP
Protein Properties Length: 838aa    MW: 92114.4 Da    PI: 6.4667
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009593967.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.51.2e-181775357
                    --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                    k  ++t+eq+e+Le+l++ +++p+  +r++L +++    +++ +q+kvWFqNrR +ek+
  XP_009593967.1 17 KYVRYTPEQVEALERLYHDCPKPTSMRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 75
                    5679*****************************************************97 PP

2START171.46e-541613692205
                     HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEE CS
           START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlm 94 
                     +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s++++g a+ra+g+v  +++  v+e+l+d++ W +++++++ l+v+ ++  g+++l 
  XP_009593967.1 161 IAEETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIIAISHGCTGVAARACGLVGLEPT-RVAEILKDRPSWFRDCRAVDALNVLPTAngGTIELL 254
                     789*******************************************************.8888888888****************9999****** PP

                     EEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHH CS
           START  95 vaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslv 185
                     +++l+a+++l+p Rdf+ +Ry+  + +g++v++++S+ ++q+ p+    +++vRae lpSg+li+p+++g+s +++v+h++l++++++++lr+l+
  XP_009593967.1 255 YMQLYAPTTLAPaRDFWLLRYTTVMDDGSLVVCERSLGNTQNGPSmppVQNFVRAEILPSGYLIRPCEGGGSIIHIVDHMNLEAWSVPEVLRPLY 349
                     ******************************************99988899********************************************* PP

                     HHHHHHHHHHHHHHTXXXXX CS
           START 186 ksglaegaktwvatlqrqce 205
                     +s+++ ++kt+va+l+++++
  XP_009593967.1 350 ESSAVLAQKTTVAALRYLRQ 369
                     ***************99876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.3371276IPR001356Homeobox domain
SMARTSM003897.4E-161480IPR001356Homeobox domain
SuperFamilySSF466891.28E-161680IPR009057Homeodomain-like
CDDcd000869.77E-171777No hitNo description
PfamPF000463.6E-161875IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.4E-181975IPR009057Homeodomain-like
CDDcd146861.14E-669108No hitNo description
PROSITE profilePS5084826.245151379IPR002913START domain
CDDcd088755.71E-76155371No hitNo description
SMARTSM002343.9E-41160370IPR002913START domain
Gene3DG3DSA:3.30.530.207.2E-22160365IPR023393START-like domain
SuperFamilySSF559611.19E-36160372No hitNo description
PfamPF018529.3E-52161369IPR002913START domain
PfamPF086703.1E-50695837IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0010014Biological Processmeristem initiation
GO:0010075Biological Processregulation of meristem growth
GO:0010087Biological Processphloem or xylem histogenesis
GO:0048263Biological Processdetermination of dorsal identity
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 838 aa     Download sequence    Send to blast
MASCKDGKTS SVLDNGKYVR YTPEQVEALE RLYHDCPKPT SMRRQQLIRE CPILSNIEPK  60
QIKVWFQNRR CREKQRKEAS RLQAVNRKLT AMNKLLMEEN DRLQKQVSQL VYENGYFRRQ  120
THSTTLATKD TSCESVVTSS QHHLTSQHPP RDASPAGLLS IAEETLTEFL SKATGTAVEW  180
VQMPGMKPGP DSIGIIAISH GCTGVAARAC GLVGLEPTRV AEILKDRPSW FRDCRAVDAL  240
NVLPTANGGT IELLYMQLYA PTTLAPARDF WLLRYTTVMD DGSLVVCERS LGNTQNGPSM  300
PPVQNFVRAE ILPSGYLIRP CEGGGSIIHI VDHMNLEAWS VPEVLRPLYE SSAVLAQKTT  360
VAALRYLRQI AQEVSQTNVT NWGRRPAALR ALSQRLSRGF NEALNGLTDE GWSMLGSDGM  420
DDITILVNSS PDKLMGLNLS FANGFSSLSN AVMCAKASML LQNVPPAILL RFLREHRSEW  480
ADNNIDAYSA AAIKVGPCCL PGAQVGNFGG QVILPLAHTV EHEELLEVIK LEGVGHSPED  540
TIMPRDMFLL QLCSGMDENA VGTSAELIFA PIDASFADDA PLLPSGFRII SLESGKESSS  600
PNRTLDLTSA LETGPAENKV GNDLHTNGGT SRSVMTIAFQ FAFESHMQEN VASMARQYVR  660
SIISSVQRVA LALSPSHLGS HGGLRLPLGT PEAHTLARWI CQSYRCFLGV ELLKSIAEGS  720
DSILKSLWHH SDAIICCSAK ALPVFTFANQ AGLDMLETTL VALQDITLEK IFDDHGKKNL  780
CTEFPQIMQQ GFACLQGGIC LSSMSRPISY ERAVAWKVMN EEDSPHCICF MFVNWSFV
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00200DAPTransfer from AT1G52150Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ6869250.0JQ686925.1 Nicotiana tabacum cultivar SR1 homeobox-leucine zipper protein ATHB-15-like protein (HB15) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009593967.10.0PREDICTED: homeobox-leucine zipper protein ATHB-15-like
RefseqXP_009593968.10.0PREDICTED: homeobox-leucine zipper protein ATHB-15-like
RefseqXP_016434105.10.0PREDICTED: homeobox-leucine zipper protein ATHB-15-like isoform X2
SwissprotQ9ZU110.0ATB15_ARATH; Homeobox-leucine zipper protein ATHB-15
TrEMBLM0ZRW90.0M0ZRW9_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000067350.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45724140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.10.0HD-ZIP family protein